IL_8QOI_347
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- ACU*AU(PSU)
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QOI_347 not in the Motif Atlas
- Geometric match to IL_4KNQ_005
- Geometric discrepancy: 0.227
- The information below is about IL_4KNQ_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 259
Unit IDs
8QOI|1|S2|A|1537
8QOI|1|S2|C|1538
8QOI|1|S2|U|1539
*
8QOI|1|S2|A|1594
8QOI|1|S2|U|1595
8QOI|1|S2|PSU|1596
Current chains
- Chain S2
- 18S rRNA (1740-MER)
Nearby chains
- Chain SF
- 40S ribosomal protein S5
- Chain SQ
- 40S ribosomal protein S16
- Chain SS
- 40S ribosomal protein S18
- Chain ST
- Small ribosomal subunit protein eS19
- Chain SZ
- 40S ribosomal protein S25
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