IL_8QOI_349

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

ACAGGA*UU

Length

8 nucleotides

Bulged bases

8QOI|1|S2|G|1285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_349 not in the Motif Atlas

Geometric match to IL_4V9F_009

Geometric discrepancy: 0.3886

The information below is about IL_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10396.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8QOI|1|S2|A|1282
8QOI|1|S2|C|1283
8QOI|1|S2|A|1284
8QOI|1|S2|G|1285
8QOI|1|S2|G|1286
8QOI|1|S2|A|1287
*
8QOI|1|S2|U|1314
8QOI|1|S2|U|1315

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain SK

40S ribosomal protein S10

Chain SM

40S ribosomal protein S12

Chain Sf

Ubiquitin-40S ribosomal protein S27a