IL_8QPA_006

3D structure

PDB id

8QPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Pre-B+5'ssLNG Complex (core part)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAC*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QPA_006 not in the Motif Atlas

Geometric match to IL_3GM7_002

Geometric discrepancy: 0.1543

The information below is about IL_3GM7_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

8QPA|1|6|U|40
8QPA|1|6|A|41
8QPA|1|6|C|42
*
8QPA|1|z|G|5
8QPA|1|z|U|6
8QPA|1|z|A|7

Current chains

Chain 6

U6 snRNA

Chain z

5'ss oligo

Nearby chains

Chain A

Pre-mRNA-processing-splicing factor 8

Chain D

Thioredoxin-like protein 4A

Chain N

Pre-mRNA-processing factor 6