IL_8QPB_007
3D structure
- PDB id
- 8QPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Pre-B+ATP Complex (core part)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AAUUGAAAACUUUUCCC*GGAACGAUACAGAGAAGAUU
- Length
- 37 nucleotides
- Bulged bases
- 8QPB|1|4|U|70, 8QPB|1|4|U|71, 8QPB|1|4|U|72, 8QPB|1|4|U|73, 8QPB|1|4|C|74, 8QPB|1|6|C|37, 8QPB|1|6|G|46, 8QPB|1|6|G|49, 8QPB|1|6|A|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QPB|1|4|A|60
8QPB|1|4|A|61
8QPB|1|4|U|62
8QPB|1|4|U|63
8QPB|1|4|G|64
8QPB|1|4|A|65
8QPB|1|4|A|66
8QPB|1|4|A|67
8QPB|1|4|A|68
8QPB|1|4|C|69
8QPB|1|4|U|70
8QPB|1|4|U|71
8QPB|1|4|U|72
8QPB|1|4|U|73
8QPB|1|4|C|74
8QPB|1|4|C|75
8QPB|1|4|C|76
*
8QPB|1|6|G|33
8QPB|1|6|G|34
8QPB|1|6|A|35
8QPB|1|6|A|36
8QPB|1|6|C|37
8QPB|1|6|G|38
8QPB|1|6|A|39
8QPB|1|6|U|40
8QPB|1|6|A|41
8QPB|1|6|C|42
8QPB|1|6|A|43
8QPB|1|6|G|44
8QPB|1|6|A|45
8QPB|1|6|G|46
8QPB|1|6|A|47
8QPB|1|6|A|48
8QPB|1|6|G|49
8QPB|1|6|A|50
8QPB|1|6|U|51
8QPB|1|6|U|52
Current chains
- Chain 4
- U4 snRNA
- Chain 6
- U6 snRNA
Nearby chains
- Chain 7
- Splicing factor 3A subunit 1
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain D
- Thioredoxin-like protein 4A
- Chain J
- U4/U6 small nuclear ribonucleoprotein Prp3
- Chain L
- U4/U6 small nuclear ribonucleoprotein Prp31
- Chain N
- Pre-mRNA-processing factor 6
- Chain z
- 5'ss oligo
Coloring options: