IL_8QPE_008
3D structure
- PDB id
- 8QPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Pre-B-like Complex (core part)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAC*GUA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QPE_008 not in the Motif Atlas
- Geometric match to IL_406D_004
- Geometric discrepancy: 0.2033
- The information below is about IL_406D_004
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.6
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 51
Unit IDs
8QPE|1|6|U|40
8QPE|1|6|A|41
8QPE|1|6|C|42
*
8QPE|1|z1|G|5
8QPE|1|z1|U|6
8QPE|1|z1|A|7
Current chains
- Chain 6
- U6 snRNA
- Chain z1
- oligo1
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain D
- Thioredoxin-like protein 4A
- Chain N
- Pre-mRNA-processing factor 6
- Chain X
- WW domain-binding protein 4
- Chain r
- Zinc finger matrin-type protein 2
- Chain z2
- oligo2
Coloring options: