IL_8QPP_031

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GU*GUC

Length

5 nucleotides

Bulged bases

8QPP|1|A|U|642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QPP_031 not in the Motif Atlas

Geometric match to IL_5TBW_130

Geometric discrepancy: 0.2658

The information below is about IL_5TBW_130

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8QPP|1|A|G|613
8QPP|1|A|U|614
*
8QPP|1|A|G|641
8QPP|1|A|U|642
8QPP|1|A|C|643

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain H

30S ribosomal protein S8

Chain Q

30S ribosomal protein S17