IL_8QPP_056
3D structure
- PDB id
- 8QPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacillus subtilis MutS2-collided disome complex (stalled 70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAAA*UUAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QPP_056 not in the Motif Atlas
- Homologous match to IL_5J7L_056
- Geometric discrepancy: 0.2423
- The information below is about IL_5J7L_056
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
8QPP|1|A|C|1268
8QPP|1|A|G|1269
8QPP|1|A|A|1270
8QPP|1|A|A|1271
8QPP|1|A|A|1272
*
8QPP|1|A|U|1281
8QPP|1|A|U|1282
8QPP|1|A|A|1283
8QPP|1|A|A|1284
8QPP|1|A|G|1285
Current chains
- Chain A
- 16S rRNA (1533-MER)
Nearby chains
- Chain S
- 30S ribosomal protein S19
Coloring options: