IL_8QPP_075

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QPP_075 not in the Motif Atlas

Homologous match to IL_7RQB_006

Geometric discrepancy: 0.0937

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8QPP|1|X|G|191
8QPP|1|X|G|192
8QPP|1|X|A|193
8QPP|1|X|A|194
8QPP|1|X|C|195
8QPP|1|X|U|196
8QPP|1|X|G|197
*
8QPP|1|X|C|204
8QPP|1|X|U|205
8QPP|1|X|A|206
8QPP|1|X|A|207
8QPP|1|X|G|208
8QPP|1|X|U|209
8QPP|1|X|A|210
8QPP|1|X|C|211

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL35

Chain i

50S ribosomal protein L15

Chain v

Large ribosomal subunit protein bL28