IL_8QPP_076

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QPP_076 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.1229

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

8QPP|1|X|C|241
8QPP|1|X|U|242
8QPP|1|X|G|243
8QPP|1|X|A|244
8QPP|1|X|G|245
8QPP|1|X|U|246
8QPP|1|X|A|247
8QPP|1|X|G|248
*
8QPP|1|X|C|256
8QPP|1|X|G|257
8QPP|1|X|A|258
8QPP|1|X|A|259
8QPP|1|X|A|260
8QPP|1|X|C|261
8QPP|1|X|G|262

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL35

Chain i

50S ribosomal protein L15