IL_8QPP_083

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QPP_083 not in the Motif Atlas

Homologous match to IL_4WF9_017

Geometric discrepancy: 0.141

The information below is about IL_4WF9_017

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

95

Unit IDs

8QPP|1|X|C|608
8QPP|1|X|C|609
8QPP|1|X|U|610
*
8QPP|1|X|A|619
8QPP|1|X|U|620
8QPP|1|X|G|621

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain i

50S ribosomal protein L15

Chain n

Large ribosomal subunit protein bL20

Chain o

Large ribosomal subunit protein bL21