IL_8QPP_096
3D structure
- PDB id
- 8QPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacillus subtilis MutS2-collided disome complex (stalled 70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QPP_096 not in the Motif Atlas
- Geometric match to IL_4WF9_031
- Geometric discrepancy: 0.0897
- The information below is about IL_4WF9_031
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.1
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8QPP|1|X|G|903
8QPP|1|X|A|904
8QPP|1|X|G|905
8QPP|1|X|G|906
8QPP|1|X|U|907
8QPP|1|X|A|908
8QPP|1|X|G|909
*
8QPP|1|X|C|962
8QPP|1|X|G|963
8QPP|1|X|A|964
8QPP|1|X|A|965
8QPP|1|X|U|966
8QPP|1|X|G|967
8QPP|1|X|C|968
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain Y
- 5S ribosomal RNA; 5S rRNA
- Chain j
- Large ribosomal subunit protein uL16
- Chain u
- Large ribosomal subunit protein bL27
- Chain x
- Large ribosomal subunit protein uL30
Coloring options: