IL_8QPP_108

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8QPP|1|X|A|1189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QPP_108 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1232

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

8QPP|1|X|U|1064
8QPP|1|X|U|1065
8QPP|1|X|A|1066
8QPP|1|X|A|1067
8QPP|1|X|G|1068
8QPP|1|X|U|1069
8QPP|1|X|G|1070
*
8QPP|1|X|C|1186
8QPP|1|X|U|1187
8QPP|1|X|A|1188
8QPP|1|X|A|1189
8QPP|1|X|A|1190

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain d

Large ribosomal subunit protein uL6

Chain e

Large ribosomal subunit protein uL13