IL_8QRM_026

3D structure

PDB id

8QRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

8QRM|1|A|A|1478

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QRM_026 not in the Motif Atlas

Homologous match to IL_6CZR_147

Geometric discrepancy: 0.1396

The information below is about IL_6CZR_147

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

8QRM|1|A|G|1175
8QRM|1|A|G|1176
*
8QRM|1|A|U|1477
8QRM|1|A|A|1478
8QRM|1|A|C|1479

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain D

28S ribosomal protein S5, mitochondrial