IL_8QRM_040
3D structure
- PDB id
- 8QRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- G(B8T)C(5MC)G*CGUAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: B8T, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QRM_040 not in the Motif Atlas
- Homologous match to IL_6CZR_166
- Geometric discrepancy: 0.131
- The information below is about IL_6CZR_166
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QRM|1|A|G|1485
8QRM|1|A|B8T|1486
8QRM|1|A|C|1487
8QRM|1|A|5MC|1488
8QRM|1|A|G|1489
*
8QRM|1|A|C|1561
8QRM|1|A|G|1562
8QRM|1|A|U|1563
8QRM|1|A|A|1564
8QRM|1|A|A|1565
8QRM|1|A|C|1566
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain 3
- Aurora kinase A-interacting protein
- Chain 8
- Translation initiation factor IF-3, mitochondrial
- Chain J
- 28S ribosomal protein S12, mitochondrial
Coloring options: