IL_8QRN_005

3D structure

PDB id

8QRN (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU in GTPBP8 knock-out cells, state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

AA*UAU

Length

5 nucleotides

Bulged bases

8QRN|1|A|A|860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QRN_005 not in the Motif Atlas

Homologous match to IL_5J7L_002

Geometric discrepancy: 0.2458

The information below is about IL_5J7L_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8QRN|1|A|A|685
8QRN|1|A|A|686
*
8QRN|1|A|U|859
8QRN|1|A|A|860
8QRN|1|A|U|861

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 7

Translation initiation factor IF-2, mitochondrial

Chain M

28S ribosomal protein S16, mitochondrial

Chain T

28S ribosomal protein S25, mitochondrial