IL_8QRN_044

3D structure

PDB id

8QRN (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU in GTPBP8 knock-out cells, state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CACCC*GACAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QRN|1|A|C|1491
8QRN|1|A|A|1492
8QRN|1|A|C|1493
8QRN|1|A|C|1494
8QRN|1|A|C|1495
*
8QRN|1|A|G|1554
8QRN|1|A|A|1555
8QRN|1|A|C|1556
8QRN|1|A|A|1557
8QRN|1|A|A|1558
8QRN|1|A|G|1559

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain 7

Translation initiation factor IF-2, mitochondrial

Chain J

28S ribosomal protein S12, mitochondrial