IL_8QRN_050
3D structure
- PDB id
- 8QRN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU in GTPBP8 knock-out cells, state 4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- AUCACCCCCUCCCCAAU*AACAUAU
- Length
- 24 nucleotides
- Bulged bases
- 8QRN|1|A|C|954, 8QRN|1|A|C|959, 8QRN|1|A|C|960, 8QRN|1|A|U|961, 8QRN|1|A|A|966, 8QRN|1|A|A|1041
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QRN|1|A|A|952
8QRN|1|A|U|953
8QRN|1|A|C|954
8QRN|1|A|A|955
8QRN|1|A|C|956
8QRN|1|A|C|957
8QRN|1|A|C|958
8QRN|1|A|C|959
8QRN|1|A|C|960
8QRN|1|A|U|961
8QRN|1|A|C|962
8QRN|1|A|C|963
8QRN|1|A|C|964
8QRN|1|A|C|965
8QRN|1|A|A|966
8QRN|1|A|A|967
8QRN|1|A|U|968
*
8QRN|1|A|A|1036
8QRN|1|A|A|1037
8QRN|1|A|C|1038
8QRN|1|A|A|1039
8QRN|1|A|U|1040
8QRN|1|A|A|1041
8QRN|1|A|U|1042
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain 2
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1
- Chain E
- 28S ribosomal protein S6, mitochondrial
- Chain J
- 28S ribosomal protein S12, mitochondrial
- Chain L
- 28S ribosomal protein S15, mitochondrial
- Chain N
- 28S ribosomal protein S17, mitochondrial
- Chain P
- 28S ribosomal protein S18c, mitochondrial
- Chain T
- 28S ribosomal protein S25, mitochondrial
- Chain U
- 28S ribosomal protein S26, mitochondrial
Coloring options: