IL_8R08_022

3D structure

PDB id

8R08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the cross-exon pre-B+AMPPNP complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

AUCUGUU*AUGUCAU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8R08|1|2|A|38
8R08|1|2|U|39
8R08|1|2|C|40
8R08|1|2|U|41
8R08|1|2|G|42
8R08|1|2|U|43
8R08|1|2|U|44
*
8R08|1|Z|A|30
8R08|1|Z|U|31
8R08|1|Z|G|32
8R08|1|Z|U|33
8R08|1|Z|C|34
8R08|1|Z|A|35
8R08|1|Z|U|36

Current chains

Chain 2

U2 snRNA

Chain Z

pre-mRNA

Nearby chains

Chain 8

Splicing factor 3A subunit 2

Chain 9

Splicing factor 3A subunit 3

Chain B1

Splicing factor 3B subunit 1

Chain B2

Splicing factor 3B subunit 2