IL_8R6C_019

3D structure

PDB id

8R6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R6C_019 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1109

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8R6C|1|A|U|409
8R6C|1|A|G|410
8R6C|1|A|A|411
8R6C|1|A|A|412
8R6C|1|A|G|413
8R6C|1|A|A|414
8R6C|1|A|A|415
8R6C|1|A|G|416
*
8R6C|1|A|U|427
8R6C|1|A|G|428
8R6C|1|A|U|429
8R6C|1|A|A|430
8R6C|1|A|A|431
8R6C|1|A|A|432
8R6C|1|A|G|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4