IL_8R6C_128

3D structure

PDB id

8R6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

8R6C|1|a|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R6C_128 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.0964

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8R6C|1|a|U|1712
8R6C|1|a|A|1713
8R6C|1|a|U|1714
8R6C|1|a|G|1715
8R6C|1|a|U|1716
8R6C|1|a|A|1717
8R6C|1|a|G|1718
*
8R6C|1|a|U|1742
8R6C|1|a|G|1743
8R6C|1|a|A|1744
8R6C|1|a|A|1745
8R6C|1|a|A|1746

Current chains

Chain a

23S ribosomal RNA

Nearby chains