IL_8R6C_185

3D structure

PDB id

8R6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CG*(PSU)GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R6C_185 not in the Motif Atlas

Homologous match to IL_4WF9_094

Geometric discrepancy: 0.0895

The information below is about IL_4WF9_094

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_46637.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

20

Unit IDs

8R6C|1|a|C|2507
8R6C|1|a|G|2508
*
8R6C|1|a|PSU|2580
8R6C|1|a|G|2581
8R6C|1|a|G|2582

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain Y

Transfer RNA; tRNA

Chain d

Large ribosomal subunit protein uL3