IL_8R8M_014

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAGU*AG

Length

6 nucleotides

Bulged bases

8R8M|1|A|G|251

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R8M_014 not in the Motif Atlas

Homologous match to IL_4LFB_012

Geometric discrepancy: 0.1981

The information below is about IL_4LFB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47074.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8R8M|1|A|U|249
8R8M|1|A|A|250
8R8M|1|A|G|251
8R8M|1|A|U|252
*
8R8M|1|A|A|274
8R8M|1|A|G|275

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS17