IL_8R8M_019

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R8M_019 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1505

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8R8M|1|A|U|409
8R8M|1|A|G|410
8R8M|1|A|A|411
8R8M|1|A|A|412
8R8M|1|A|G|413
8R8M|1|A|A|414
8R8M|1|A|A|415
8R8M|1|A|G|416
*
8R8M|1|A|U|427
8R8M|1|A|G|428
8R8M|1|A|U|429
8R8M|1|A|A|430
8R8M|1|A|A|431
8R8M|1|A|A|432
8R8M|1|A|G|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4