IL_8R8M_028

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R8M_028 not in the Motif Atlas

Homologous match to IL_5J7L_028

Geometric discrepancy: 0.088

The information below is about IL_5J7L_028

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

8R8M|1|A|U|594
8R8M|1|A|A|595
8R8M|1|A|A|596
*
8R8M|1|A|U|644
8R8M|1|A|G|645

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

Small ribosomal subunit protein uS8

Chain Q

Small ribosomal subunit protein uS17