3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UAA*UG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8R8M_028 not in the Motif Atlas
Homologous match to IL_5J7L_028
Geometric discrepancy: 0.088
The information below is about IL_5J7L_028
Detailed Annotation
Major groove platform
Broad Annotation
No text annotation
Motif group
IL_48076.6
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
41

Unit IDs

8R8M|1|A|U|594
8R8M|1|A|A|595
8R8M|1|A|A|596
*
8R8M|1|A|U|644
8R8M|1|A|G|645

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain H
Small ribosomal subunit protein uS8
Chain Q
Small ribosomal subunit protein uS17

Coloring options:


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