IL_8R8M_037
3D structure
- PDB id
- 8R8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CAAAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8R8M_037 not in the Motif Atlas
- Homologous match to IL_5J7L_037
- Geometric discrepancy: 0.0567
- The information below is about IL_5J7L_037
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
8R8M|1|A|C|779
8R8M|1|A|A|780
8R8M|1|A|A|781
8R8M|1|A|A|782
8R8M|1|A|C|783
*
8R8M|1|A|G|799
8R8M|1|A|G|800
8R8M|1|A|U|801
8R8M|1|A|A|802
8R8M|1|A|G|803
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain K
- Small ribosomal subunit protein uS11
- Chain U
- Small ribosomal subunit protein bS21
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: