IL_8R8M_066

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R8M_066 not in the Motif Atlas

Homologous match to IL_5J7L_245

Geometric discrepancy: 0.0399

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8R8M|1|a|G|24
8R8M|1|a|U|25
8R8M|1|a|G|26
8R8M|1|a|G|27
8R8M|1|a|A|28
8R8M|1|a|U|29
8R8M|1|a|G|30
*
8R8M|1|a|C|510
8R8M|1|a|U|511
8R8M|1|a|G|512
8R8M|1|a|A|513
8R8M|1|a|A|514
8R8M|1|a|A|515
8R8M|1|a|C|516

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32