IL_8R8M_074

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R8M_074 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3504

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8R8M|1|a|C|274
8R8M|1|a|C|275
8R8M|1|a|U|276
8R8M|1|a|G|277
8R8M|1|a|A|278
8R8M|1|a|A|279
8R8M|1|a|U|280
8R8M|1|a|C|281
*
8R8M|1|a|G|359
8R8M|1|a|U|360
8R8M|1|a|G|361
8R8M|1|a|A|362
8R8M|1|a|G|363

Current chains

Chain a

23S ribosomal RNA

Nearby chains