3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GCAAG*CAACC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8R8M_095 not in the Motif Atlas
Homologous match to IL_5J7L_274
Geometric discrepancy: 0.1988
The information below is about IL_5J7L_274
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

8R8M|1|a|G|875
8R8M|1|a|C|876
8R8M|1|a|A|877
8R8M|1|a|A|878
8R8M|1|a|G|879
*
8R8M|1|a|C|898
8R8M|1|a|A|899
8R8M|1|a|A|900
8R8M|1|a|C|901
8R8M|1|a|C|902

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain Y
Transfer RNA; tRNA
Chain l
Large ribosomal subunit protein uL16

Coloring options:


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