IL_8R8M_101
3D structure
- PDB id
- 8R8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 8R8M|1|a|A|1127, 8R8M|1|a|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8R8M_101 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.0433
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
8R8M|1|a|G|1024
8R8M|1|a|G|1025
8R8M|1|a|G|1026
8R8M|1|a|A|1027
8R8M|1|a|A|1028
8R8M|1|a|A|1029
8R8M|1|a|C|1030
*
8R8M|1|a|G|1124
8R8M|1|a|G|1125
8R8M|1|a|A|1126
8R8M|1|a|A|1127
8R8M|1|a|G|1128
8R8M|1|a|A|1129
8R8M|1|a|U|1130
8R8M|1|a|G|1131
8R8M|1|a|U|1132
8R8M|1|a|A|1133
8R8M|1|a|A|1134
8R8M|1|a|C|1135
8R8M|1|a|G|1136
8R8M|1|a|G|1137
8R8M|1|a|G|1138
8R8M|1|a|G|1139
8R8M|1|a|C|1140
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36A
- Chain d
- Large ribosomal subunit protein uL3
- Chain i
- Large ribosomal subunit protein uL13
- Chain l
- Large ribosomal subunit protein uL16
Coloring options: