3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
8R8M|1|a|A|1127, 8R8M|1|a|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8R8M_101 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.0433
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

8R8M|1|a|G|1024
8R8M|1|a|G|1025
8R8M|1|a|G|1026
8R8M|1|a|A|1027
8R8M|1|a|A|1028
8R8M|1|a|A|1029
8R8M|1|a|C|1030
*
8R8M|1|a|G|1124
8R8M|1|a|G|1125
8R8M|1|a|A|1126
8R8M|1|a|A|1127
8R8M|1|a|G|1128
8R8M|1|a|A|1129
8R8M|1|a|U|1130
8R8M|1|a|G|1131
8R8M|1|a|U|1132
8R8M|1|a|A|1133
8R8M|1|a|A|1134
8R8M|1|a|C|1135
8R8M|1|a|G|1136
8R8M|1|a|G|1137
8R8M|1|a|G|1138
8R8M|1|a|G|1139
8R8M|1|a|C|1140

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain 3
Large ribosomal subunit protein bL36A
Chain d
Large ribosomal subunit protein uL3
Chain i
Large ribosomal subunit protein uL13
Chain l
Large ribosomal subunit protein uL16

Coloring options:


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