3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GUAAG*UAUC
Length
9 nucleotides
Bulged bases
8R8M|1|a|A|1205
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8R8M_106 not in the Motif Atlas
Homologous match to IL_5J7L_287
Geometric discrepancy: 0.0529
The information below is about IL_5J7L_287
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_91920.1
Basepair signature
cWW-cWW-tHH-cWW
Number of instances in this motif group
1

Unit IDs

8R8M|1|a|G|1202
8R8M|1|a|U|1203
8R8M|1|a|A|1204
8R8M|1|a|A|1205
8R8M|1|a|G|1206
*
8R8M|1|a|U|1240
8R8M|1|a|A|1241
8R8M|1|a|U|1242
8R8M|1|a|C|1243

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain e
Large ribosomal subunit protein uL4
Chain k
50S ribosomal protein L15

Coloring options:


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