3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UG*CAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8R8M_120 not in the Motif Atlas
Homologous match to IL_5J7L_301
Geometric discrepancy: 0.2755
The information below is about IL_5J7L_301
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_00881.1
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

8R8M|1|a|U|1481
8R8M|1|a|G|1482
*
8R8M|1|a|C|1507
8R8M|1|a|A|1508
8R8M|1|a|A|1509
8R8M|1|a|G|1510

Current chains

Chain a
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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