IL_8R8M_127

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8R8M|1|a|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R8M_127 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0552

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8R8M|1|a|C|1686
8R8M|1|a|G|1687
8R8M|1|a|U|1688
8R8M|1|a|A|1689
8R8M|1|a|A|1690
8R8M|1|a|C|1691
*
8R8M|1|a|G|1696
8R8M|1|a|G|1697
8R8M|1|a|A|1698
8R8M|1|a|G|1699
8R8M|1|a|A|1700
8R8M|1|a|A|1701
8R8M|1|a|G|1702

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

Large ribosomal subunit protein uL2