IL_8R8M_135
3D structure
- PDB id
- 8R8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UUAG*CGAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8R8M_135 not in the Motif Atlas
- Homologous match to IL_5J7L_317
- Geometric discrepancy: 0.097
- The information below is about IL_5J7L_317
- Detailed Annotation
- UAA/GAN variation
- Broad Annotation
- No text annotation
- Motif group
- IL_77691.5
- Basepair signature
- cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8R8M|1|a|U|1864
8R8M|1|a|U|1865
8R8M|1|a|A|1866
8R8M|1|a|G|1867
*
8R8M|1|a|C|1874
8R8M|1|a|G|1875
8R8M|1|a|A|1876
8R8M|1|a|A|1877
8R8M|1|a|G|1878
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: