3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CGAAA(5MU)UCCUUG*C(5MC)UG
Length
16 nucleotides
Bulged bases
8R8M|1|a|A|1938, 8R8M|1|a|U|1944
QA status
Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8R8M_138 not in the Motif Atlas
Geometric match to IL_7A0S_072
Geometric discrepancy: 0.1486
The information below is about IL_7A0S_072
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04332.3
Basepair signature
cWW-L-R-L-cWW-L-L-R-L-R-L
Number of instances in this motif group
2

Unit IDs

8R8M|1|a|C|1934
8R8M|1|a|G|1935
8R8M|1|a|A|1936
8R8M|1|a|A|1937
8R8M|1|a|A|1938
8R8M|1|a|5MU|1939
8R8M|1|a|U|1940
8R8M|1|a|C|1941
8R8M|1|a|C|1942
8R8M|1|a|U|1943
8R8M|1|a|U|1944
8R8M|1|a|G|1945
*
8R8M|1|a|C|1961
8R8M|1|a|5MC|1962
8R8M|1|a|U|1963
8R8M|1|a|G|1964

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain Y
Transfer RNA; tRNA
Chain c
Large ribosomal subunit protein uL2

Coloring options:


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