3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CCAAG*CGACG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8R8M_153 not in the Motif Atlas
Homologous match to IL_5J7L_338
Geometric discrepancy: 0.0936
The information below is about IL_5J7L_338
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

8R8M|1|a|C|2466
8R8M|1|a|C|2467
8R8M|1|a|A|2468
8R8M|1|a|A|2469
8R8M|1|a|G|2470
*
8R8M|1|a|C|2480
8R8M|1|a|G|2481
8R8M|1|a|A|2482
8R8M|1|a|C|2483
8R8M|1|a|G|2484

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain 3
Large ribosomal subunit protein bL36A
Chain l
Large ribosomal subunit protein uL16

Coloring options:


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