IL_8RC3_002

3D structure

PDB id

8RC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

DNA bound type IV-A1 CRISPR effector complex from P. oleovorans

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CTTG

Length

8 nucleotides

Bulged bases

8RC3|1|H|A|6, 8RC3|1|I|DT|-6

QA status

Self-complementary: CAAG,CTTG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RC3|1|H|C|5
8RC3|1|H|A|6
8RC3|1|H|A|7
8RC3|1|H|G|8
*
8RC3|1|I|DC|-8
8RC3|1|I|DT|-7
8RC3|1|I|DT|-6
8RC3|1|I|DG|-5

Current chains

Chain H

crRNA

Chain I

Target strand (TS) DNA

Nearby chains

Chain A

CRISPR type AFERR-associated protein Csf2

Chain B

CRISPR type AFERR-associated protein Csf2

Chain C

CRISPR type AFERR-associated protein Csf2