IL_8RCL_036

3D structure

PDB id

8RCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGGAAAC*GGAAGAUGUAACGGGGC

Length

24 nucleotides

Bulged bases

8RCL|1|72|A|1127, 8RCL|1|72|U|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCL_036 not in the Motif Atlas

Geometric match to IL_5J7L_281

Geometric discrepancy: 0.0912

The information below is about IL_5J7L_281

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.3

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

8RCL|1|72|G|1024
8RCL|1|72|G|1025
8RCL|1|72|G|1026
8RCL|1|72|A|1027
8RCL|1|72|A|1028
8RCL|1|72|A|1029
8RCL|1|72|C|1030
*
8RCL|1|72|G|1124
8RCL|1|72|G|1125
8RCL|1|72|A|1126
8RCL|1|72|A|1127
8RCL|1|72|G|1128
8RCL|1|72|A|1129
8RCL|1|72|U|1130
8RCL|1|72|G|1131
8RCL|1|72|U|1132
8RCL|1|72|A|1133
8RCL|1|72|A|1134
8RCL|1|72|C|1135
8RCL|1|72|G|1136
8RCL|1|72|G|1137
8RCL|1|72|G|1138
8RCL|1|72|G|1139
8RCL|1|72|C|1140

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain h2

50S ribosomal protein L16