IL_8RCL_168

3D structure

PDB id

8RCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCL_168 not in the Motif Atlas

Geometric match to IL_4LFB_047

Geometric discrepancy: 0.1176

The information below is about IL_4LFB_047

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

8RCL|1|A1|G|1061
8RCL|1|A1|U|1062
8RCL|1|A1|C|1063
*
8RCL|1|A1|G|1193
8RCL|1|A1|U|1194
8RCL|1|A1|C|1195

Current chains

Chain A1

16S ribosomal RNA

Nearby chains

Chain C1

Small ribosomal subunit protein uS3

Chain E1

Small ribosomal subunit protein uS5

Chain I1

Small ribosomal subunit protein uS9

Chain J1

30S ribosomal protein S10

Chain V2

messenger RNA