IL_8RCL_175

3D structure

PDB id

8RCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCL_175 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.2171

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8RCL|1|A1|C|1259
8RCL|1|A1|G|1260
8RCL|1|A1|A|1261
8RCL|1|A1|C|1262
8RCL|1|A1|C|1263
*
8RCL|1|A1|G|1272
8RCL|1|A1|C|1273
8RCL|1|A1|A|1274
8RCL|1|A1|A|1275
8RCL|1|A1|G|1276

Current chains

Chain A1

16S ribosomal RNA

Nearby chains

Chain N1

Small ribosomal subunit protein uS14

Chain S1

Small ribosomal subunit protein uS19