IL_8RCM_048

3D structure

PDB id

8RCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCM_048 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.089

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8RCM|1|72|A|1262
8RCM|1|72|U|1263
8RCM|1|72|A|1264
8RCM|1|72|A|1265
8RCM|1|72|G|1266
8RCM|1|72|U|1267
8RCM|1|72|A|1268
8RCM|1|72|A|1269
*
8RCM|1|72|U|2011
8RCM|1|72|G|2012
8RCM|1|72|A|2013
8RCM|1|72|A|2014
8RCM|1|72|A|2015
8RCM|1|72|U|2016
8RCM|1|72|U|2017

Current chains

Chain 72

23S ribosomal RNA

Nearby chains