IL_8RCM_068

3D structure

PDB id

8RCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCM_068 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.3339

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8RCM|1|72|U|1712
8RCM|1|72|A|1713
8RCM|1|72|U|1714
8RCM|1|72|G|1715
8RCM|1|72|U|1716
8RCM|1|72|A|1717
8RCM|1|72|G|1718
*
8RCM|1|72|U|1742
8RCM|1|72|G|1743
8RCM|1|72|A|1744
8RCM|1|72|A|1745
8RCM|1|72|A|1746

Current chains

Chain 72

23S ribosomal RNA

Nearby chains