IL_8RCM_138

3D structure

PDB id

8RCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GGC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCM_138 not in the Motif Atlas

Geometric match to IL_4E48_006

Geometric discrepancy: 0.1567

The information below is about IL_4E48_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8RCM|1|A1|G|416
8RCM|1|A1|G|417
8RCM|1|A1|C|418
*
8RCM|1|A1|G|425
8RCM|1|A1|U|426
8RCM|1|A1|U|427

Current chains

Chain A1

16S ribosomal RNA

Nearby chains

Chain 72

Large subunit ribosomal RNA; LSU rRNA

Chain D1

Small ribosomal subunit protein uS4