IL_8RCM_180

3D structure

PDB id

8RCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCM_180 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2197

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8RCM|1|A1|C|1303
8RCM|1|A1|G|1304
8RCM|1|A1|G|1305
8RCM|1|A1|A|1306
8RCM|1|A1|U|1307
8RCM|1|A1|U|1308
*
8RCM|1|A1|A|1329
8RCM|1|A1|U|1330
8RCM|1|A1|G|1331
8RCM|1|A1|A|1332
8RCM|1|A1|A|1333
8RCM|1|A1|G|1334

Current chains

Chain A1

16S ribosomal RNA

Nearby chains

Chain M1

Small ribosomal subunit protein uS13