IL_8RCM_286

3D structure

PDB id

8RCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

AGGUAG*CGCUU

Length

11 nucleotides

Bulged bases

8RCM|1|A1|A|1441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCM_286 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3448

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

8RCM|1|A1|A|1437
8RCM|1|A1|G|1438
8RCM|1|A1|G|1439
8RCM|1|A1|U|1440
8RCM|1|A1|A|1441
8RCM|1|A1|G|1442
*
8RCM|1|A1|C|1460
8RCM|1|A1|G|1461
8RCM|1|A1|C|1462
8RCM|1|A1|U|1463
8RCM|1|A1|U|1464

Current chains

Chain A1

16S ribosomal RNA

Nearby chains

Chain T1

Small ribosomal subunit protein bS20