IL_8RCS_211

3D structure

PDB id

8RCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.46 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

8RCS|1|A2|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCS_211 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.1769

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8RCS|1|A2|G|446
8RCS|1|A2|G|447
8RCS|1|A2|A|448
8RCS|1|A2|G|449
8RCS|1|A2|G|450
*
8RCS|1|A2|C|483
8RCS|1|A2|G|484
8RCS|1|A2|U|485
8RCS|1|A2|U|486
8RCS|1|A2|A|487
8RCS|1|A2|C|488

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain D2

Small ribosomal subunit protein uS4