IL_8RCS_228

3D structure

PDB id

8RCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.46 Å

Loop

Sequence

AGG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCS_228 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1571

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8RCS|1|A2|A|831
8RCS|1|A2|G|832
8RCS|1|A2|G|833
*
8RCS|1|A2|C|853
8RCS|1|A2|U|854
8RCS|1|A2|U|855

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain B2

Small ribosomal subunit protein uS2

Chain R2

Small ribosomal subunit protein bS18

Chain U2

30S ribosomal protein S21