IL_8RCT_086

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

8RCT|1|72|U|2111, 8RCT|1|72|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCT_086 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.2068

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

8RCT|1|72|G|2110
8RCT|1|72|U|2111
8RCT|1|72|G|2112
8RCT|1|72|U|2113
8RCT|1|72|A|2114
8RCT|1|72|G|2115
8RCT|1|72|G|2116
8RCT|1|72|A|2117
8RCT|1|72|U|2118
8RCT|1|72|A|2119
8RCT|1|72|G|2120
*
8RCT|1|72|C|2178
8RCT|1|72|C|2179

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain W

Transfer RNA; tRNA

Chain a2

Large ribosomal subunit protein uL1