IL_8RCT_140

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

8RCT|1|A1|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCT_140 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.1646

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8RCT|1|A1|G|446
8RCT|1|A1|G|447
8RCT|1|A1|A|448
8RCT|1|A1|G|449
8RCT|1|A1|G|450
*
8RCT|1|A1|C|483
8RCT|1|A1|G|484
8RCT|1|A1|U|485
8RCT|1|A1|U|486
8RCT|1|A1|A|487
8RCT|1|A1|C|488

Current chains

Chain A1

16S ribosomal RNA

Nearby chains

Chain D1

Small ribosomal subunit protein uS4

Chain P1

30S ribosomal protein S16

Chain i2

50S ribosomal protein L9