IL_8RCT_179

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCT_179 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2284

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8RCT|1|A1|C|1303
8RCT|1|A1|G|1304
8RCT|1|A1|G|1305
8RCT|1|A1|A|1306
8RCT|1|A1|U|1307
8RCT|1|A1|U|1308
*
8RCT|1|A1|A|1329
8RCT|1|A1|U|1330
8RCT|1|A1|G|1331
8RCT|1|A1|A|1332
8RCT|1|A1|A|1333
8RCT|1|A1|G|1334

Current chains

Chain A1

16S ribosomal RNA

Nearby chains

Chain M1

Small ribosomal subunit protein uS13