IL_8RCT_215

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCT_215 not in the Motif Atlas

Homologous match to IL_5J7L_024

Geometric discrepancy: 0.1468

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8RCT|1|A2|C|504
8RCT|1|A2|G|505
8RCT|1|A2|G|506
8RCT|1|A2|C|507
8RCT|1|A2|U|508
8RCT|1|A2|A|509
8RCT|1|A2|A|510
8RCT|1|A2|C|511
*
8RCT|1|A2|G|540
8RCT|1|A2|G|541

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain D2

Small ribosomal subunit protein uS4

Chain L2

Small ribosomal subunit protein uS12

Chain V2

messenger RNA